Package index
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Congo.EbolaIncidence - Congo Ebola Incidence data from the 2018 Ebola epidemic in the Democratic Republic of Congo.
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SVEIRD.BayesianDataAssimilation() - SVEIRD compartmental model with optional Bayesian data assimilation
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assimilateData() - Bayesian data assimilation
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castSeedDataQueensNeighbourhood() - Seed the initial infections, and other compartments, in a spatial simulation
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classify.binary() - Create a binary reclassification of the input SpatRaster
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.onLoad() - Cause side-effects when loading this package
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downloadWorldPopData() - Download WorldPop 2020 data
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getCountryPopulation.SpatRaster() - Retrieve a population count SpatRaster
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getCountrySubregions.SpatVector() - Get a country's GADM SpatVector, from GADM verison 3.6
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getSVEIRD.SpatRaster() - Create a SpatRaster of SVEIRD model compartment raster data
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healthZonesCongo - Reporting health zones of the Democratic Republic of Congo
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initialInfections.fourCities - 2018 Congo Ebola epidmeic data
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reclassifyBelowUpperBound() - Reclassify Below Upper Bound